Читать книгу "Вопрос жизни. Энергия, эволюция и происхождение сложности - Лейн Николас"

Harold, F. In Search of Cell History: The Evolution of Life’s Building Blocks. Chicago University Press, Chicago (2014).

Koonin, E. V. The origin and early evolution of eukaryotes in the light of phylogenomics // Genome Biology 11: 209 (2010).

McInerney, J. O., Martin, W. F., Koonin, E. V., Allen, J. F., Galperin, M. Y., Lane, N., Archibald, J. M., and T. M. Embley Planctomycetes and eukaryotes: a case of analogy not homology // BioEssays 33: 810–817 (2011).

Парадокс малых шагов к сложности

Darwin, C. On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life. 1st edn. John Murray, London (1859).

Land, M. F., and D.-E. Nilsson Animal Eyes. Oxford University Press, Oxford (2002).

Lane, N. Bioenergetic constraints on the evolution of complex life // Cold Spring Harbor Perspectives in Biology, doi: 10.1101/cshperspect.a015982 (2014).

Lane, N. Energetics and genetics across the prokaryote-eukaryote divide // Biology Direct 6: 35 (2011).

Müller, M., Mentel, M., van Hellemond, J. J., Henze, K., Woehle, C., Gould, S. B., Yu, R. Y., van der Giezen, M., Tielens, A. G., and W. F. Martin Biochemistry and evolution of anaerobic energy metabolism in eukaryotes // Microbiology and Molecular Biology Reviews 76: 444–495 (2012).

Глава 2. Что значит жить?

Энергия, энтропия и структура

Amend, J. P., LaRowe, D. E., McCollom, T. M., and E. L. Shock The energetics of organic synthesis inside and outside the cell // Phil. Trans. R. Soc. B. 368: 20120255 (2013).

Battley, E. H. Energetics of Microbial Growth. Wiley Interscience, New York (1987).

Hansen L. D., Criddle, R. S., and E. H. Battley Biological calorimetry and the thermodynamics of the origination and evolution of life // Pure and Applied Chemistry 81: 1843–1855 (2009).

McCollom, T., and J. P. Amend A thermodynamic assessment of energy requirements for biomass synthesis by chemolithoautotrophic micro-organisms in oxic and micro-oxic environments // Geobiology 3: 135–144 (2005).

Minsky, A., Shimoni, E., and D. Frenkiel-Krispin Stress, order and survival // Nature Reviews in Molecular Cell Biology 3: 50–60 (2002).

Скорость синтеза АТФ

Fenchel, T., and B. J. Finlay Respiration rates in heterotrophic, free-living protozoa // Microbial Ecology 9: 99–122 (1983).

Makarieva, A. M., Gorshkov, V. G., and B. L. Li Energetics of the smallest: do bacteria breathe at the same rate as whales? Proc. R. Soc. B 272: 2219–2224 (2005).

Phillips, R., Kondev, J., Theriot, J., and H. Garcia Physical Biology of the Cell. Garland Science, New York (2012).

Rich, P. R. The cost of living // Nature 421: 583 (2003).

Schatz, G. The tragic matter // FEBS Letters 536: 1–2 (2003).

Механизм дыхания и синтез АТФ

Abrahams, J. P., Leslie, A. G., Lutter, R., and J. E. Walker Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria // Nature 370: 621–628 (1994).

Baradaran, R., Berrisford, J. M., Minhas, S. G., and L. A. Sazanov Crystal structure of the entire respiratory complex I // Nature 494: 443–448 (2013).

Hayashi, T., and A. A. Stuchebrukhov Quantum electron tunneling in respiratory complex I // Journal of Physical Chemistry B 115: 5354–5364 (2011).

Moser, C. C., Page, C. C., and P. L. Dutton Darwin at the molecular scale: selection and variance in electron tunnelling proteins including cytochrome c oxidase // Phil. Trans. R. Soc. B 361: 1295–1305 (2006).

Murata, T., Yamato, I., Kakinuma, Y., Leslie, A. G. W., and J. E. Walker Structure of the rotor of the V-type Na+-ATPase from Enterococcus hirae // Science 308: 654–659 (2005).

Nicholls, D. G., and S. J. Ferguson Bioenergetics. 4th edn. Academic Press, London (2013).

Stewart, A. G., Sobti, M., Harvey, R. P., and D. Stock Rotary ATPases: Models, machine elements and technical specifications // BioArchitecture 3: 2–12 (2013).

Vinothkumar, K. R., Zhu, J., and J. Hirst Architecture of the mammalian respiratory complex I // Nature 515: 80–84 (2014).

Питер Митчелл и хемиосмотическое сопряжение

Harold, F. M. The Way of the Cell: Molecules, Organisms, and the Order of Life. Oxford University Press, New York (2003).

Lane, N. Power, Sex, Suicide: Mitochondria and the Meaning of Life. Oxford University Press, Oxford (2005).

Mitchell, P. Coupling of phosphorylation to electron and hydrogen transfer by a chemiosmotic type of mechanism // Nature 191: 144–148 (1961).

Mitchell, P. Keilin’s respiratory chain concept and its chemiosmotic consequences // Science 206: 1148–1159 (1979).

Mitchell, P. The origin of life and the formation and organising functions of natural membranes / In: Proceedings of the first international symposium on the origin of life on the Earth. Oparin, A. I., Pasynski, A. G., Braunstein, A. E., and T. E. Pavlovskaya, eds. Moscow Academy of Sciences, USSR (1957).

Prebble, J., and B. Weber Wandering in the Gardens of the Mind. Oxford University Press, New York (2003).

Углерод и необходимость окислительно-восстановительных реакций

Falkowski, P. Life’s engines: how microbes made Еarth habitable. Princeton University Press, Princeton (2015).

Kim, J. D., Senn, S., Harel, A., Jelen, B. I., and P. G. Falkowski Discovering the electronic circuit diagram of life: structural relationships among transition metal binding sites in oxidoreductases // Phil. Trans. R. Soc. B 368: 20120257 (2013).

Morton, O. Eating the Sun: How Plants Power the Planet. Fourth Estate, London (2007).

Pace, N. The universal nature of biochemistry // Proceedings National Academy Sciences USA 98: 805–808 (2001).

Schoepp-Cothenet, B., van Lis, R., Atteia, A., Baymann, F., Capowiez, L., Ducluzeau, A.-L., Duval, S., Brink, F. ten, Russell, M. J., and W. Nitschke On the universal core of bioenergetics // Biochimica Biophysica Acta Bioenergetics 1827: 79–93 (2013).