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Cleaves II, H. J. The prebiotic geochemistry of formaldehyde // Precambrian Research, 2008, vol. 164, pp. 111–118. DOI: 10.1016/j. precamres. 2008.04.002

Cleaves, H. J. & Miller, S. L. The Nicotinamide Biosynthetic Pathway Is a By-Product of the RNA World // Journal of Molecular Evolution, 2001, vol. 52, pp. 73–77. DOI: 10.1007/s002390010135

Connerney, J. E. P. et al. Tectonic implications of Mars crustal magnetism // Proceedings of the National Academy of Sciences of the United States of America, 2005, vol. 102, pp. 14970–14975. DOI: 10.1073/pnas.0507469102

Copley, S. D., Smith, E. & Morowitz, H. J. A mechanism for the association of amino acids with their codons and the origin of the genetic code // Proceedings of the National Academy of Sciences of the United States of America, 2005, vol. 102, pp. 4442–4447. DOI: 10.1073/pnas.0501049102

Costanzo, G., Pino, S., Ciciriello, F. & Mauro, E. D. Generation of Long RNA Chains in Water // Journal of Biological Chemistry, 2009, vol. 284, pp. 33206–33216. DOI: 10.1074/jbc.M109.041905

Costanzo, G., Saladino, R., Crestini, C., Ciciriello, F. & Mauro, E. D. Formamide as the main building block in the origin of nucleic acids // BMC Evolutionary Biology, 2007, vol. 7, S1. DOI: 10.1186/1471-2148-7-S2-S1

Cozens, C., Pinheiro, V. B., Vaisman, A., Woodgate, R. & Holliger, P. A short adaptive path from DNA to RNA polymerases // Proceedings of the National Academy of Sciences, 2012, vol. 109, pp. 8067–8072. DOI: 10.1073/pnas.1120964109

Crida, A. Solar System formation // arXiv: 0903.3008 [astro-ph], 2009.

Čuboňová, L. et al. Archaeal DNA Polymerase D but Not DNA Polymerase B Is Required for Genome Replication in Thermococcus kodakarensis // Journal of Bacteriology, 2013, vol. 195, pp. 2322–2328. DOI: 10.1128/JB.02037–12

Dadachova, E. et al. Ionizing Radiation Changes the Electronic Properties of Melanin and Enhances the Growth of Melanized Fungi // PLoS ONE, 2007, vol. 2. DOI: 10.1371/journal. pone.0000457

Dailey, H. A. Illuminating the black box of B12 biosynthesis // Proceedings of the National Academy of Sciences, 2013, vol. 110, pp. 14823–14824 (2013). DOI: 10.1073/pnas.1313998110

Dailey, H. A., Gerdes, S., Dailey, T. A., Burch, J. S. & Phillips, J. D. Noncanonical coproporphyrin-dependent bacterial heme biosynthesis pathway that does not use protoporphyrin // Proceedings of the National Academy of Sciences, 2015, vol. 112, pp. 2210–2215. DOI: 10.1073/pnas.1416285112

Dawkins. The River out of Eden. Harper Collins, 1996.

Desmond, E. & Gribaldo, S. Phylogenomics of Sterol Synthesis: Insights into the Origin, Evolution, and Diversity of a Key Eukaryotic Feature // Genome Biology and Evolution, 2009, vol. 1, pp. 364–381. DOI: 10.1093/gbe/evp036

Di Giulio, M. An extension of the coevolution theory of the origin of the genetic code // Biology Direct, 2008, vol. 3, pp. 37–37. DOI: 10.1186/1745-6150-3-37

Dibrova, D. V., Cherepanov, D. A., Galperin, M. Y., Skulachev, V. P. & Mulkidjanian, A. Y. Evolution of cytochrome bc complexes: From membrane-anchored dehydrogenases of ancient bacteria to triggers of apoptosis in vertebrates // Biochimica et Biophysica Acta (BBA) – Bioenergetics, 2013, vol. 1827, pp. 1407–1427. DOI: 10.1016/j. bbabio.2013.07.006

Dibrova, D. V., Makarova, K. S., Galperin, M. Y., Koonin, E. V. & Mulkidjanian, A. Y. Comparative analysis of lipid biosynthesis in archaea, bacteria and eukaryotes: What was the structure of the first membrane lipids? // Biochimica et Biophysica Acta (BBA) – Bioenergetics, 2012, vol. 1817, Supplement, S154. DOI: 10.1016/j. bbabio.2012.06.404

Dismukes, G. C. et al. The origin of atmospheric oxygen on Earth: The innovation of oxygenic photosynthesis // Proceedings of the National Academy of Sciences, 2001, vol. 98, pp. 2170–2175. DOI: 10.1073/pnas.061514798

Douglas, R. H. et al. Dragon fish see using chlorophyll // Nature, 1998, vol. 393, pp. 423–424. DOI: 10.1038/30871

Ducluzeau, A.-L. et al. Was nitric oxide the first deep electron sink? // Trends in Biochemical Sciences, 2009, vol. 34, pp. 9–15. DOI: 10.1016/j. tibs.2008.10.005

Engelhart, A. E., Powner, M. W. & Szostak, J. W. Functional RNAs exhibit tolerance for non-heritable 2`-5` vs. 3`-5` backbone heterogeneity // Nature chemistry, 2013, vol. 5, pp. 390–394. DOI: 10.1038/nchem.1623

Eschenmoser, A. On a Hypothetical Generational Relationship between HCN and Constituents of the Reductive Citric Acid Cycle // Chemistry & Biodiversity, 2007, vol. 4, pp. 554–573. DOI: 10.1002/cbdv.200790050

Ettema, T. J. G., Lindås, A.-C. & Bernander, R. An actin-based cytoskeleton in archaea // Molecular microbiology, 2011, vol. 80, pp. 1052–1061. DOI: 10.1111/j. 1365–2958.2011.07635.x

Fairén, A. G., Fernández-Remolar, D., Dohm, J. M., Baker, V. R. & Amils, R. Inhibition of carbonate synthesis in acidic oceans on early Mars // Nature, 2004, vol. 431, pp. 423–426. DOI: 10.1038/nature02911

Figueroa, R. I., Bravo, I., Fraga, S., Garcés, E. & Llaveria, G. The Life History and Cell Cycle of Kryptoperidinium foliaceum, A Dinoflagellate with Two Eukaryotic Nuclei // Protist, 2009, vol. 160, pp. 285–300. DOI: 10.1016/j.protis.2008.12.003

Fisher, M. A., McKinley, K. L., Bradley, L. H., Viola, S. R. & Hecht, M. H. De Novo Designed Proteins from a Library of Artificial Sequences Function in Escherichia Coli and Enable Cell Growth // PLoS ONE, 2011, vol. 6. DOI: 10.1371/journal.pone.0015364

Fitz, D., Jakschitz, T. & Rode, B. M. in Origins of Life: The Primal Self-Organization (eds. Egel, R., Lankenau, D.-H. & Mulkidjanian, A. Y.), pp. 109–127 (Springer Berlin Heidelberg, 2011).

Forterre, P. & Prangishvili, D. The origin of viruses // Research in Microbiology, 2009, vol. 160, pp. 466–472. DOI: 16/j.resmic.2009.07.008

Forterre, P. A new fusion hypothesis for the origin of Eukarya: better than previous ones, but probably also wrong // Research in microbiology, 2011, vol. 162, pp. 77–91. DOI: 10.1016/j.resmic.2010.10.005

Forterre, P. The origin of DNA genomes and DNA replication proteins // Current Opinion in Microbiology, 2002, vol. 5, pp. 525–532. DOI: 10.1016/S1369–5274(02)00360–0

Forterre, P. The two ages of the RNA world, and the transition to the DNA world: a story of viruses and cells // Biochimie, 2005, vol. 87, pp. 793–803. DOI: 10.1016/j. biochi.2005.03.015

Forterre, P. Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: A hypothesis for the origin of cellular domain // Proceedings of the National Academy of Sciences of the United States of America, 2006, vol. 103, pp. 3669–3674. DOI: 10.1073/pnas.0510333103